Hi Scorpion99,
Do you want to new a document with web apps but edit those using Microsoft Office clients?
If so, based on your situation, you can consider the workaround as below:
1. Disable the add-on, click New Document, when the Create New Document web open, copy the URL
2. Click Site Actions -> Site Settings, click Quick launch under Look and Feel
3. Add New Navigation Link to a position that you prefer, copy the URL, click OK
4. Then you can new document from web by this navigation link
5. Enable add-on, and then you can edit documents using Microsoft Office
Thanks,
Nancy Xie